PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00968.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 355aa    MW: 39664 Da    PI: 8.7112
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00968.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.87.6e-421322943133
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 
                                kdrhski T++g+RdRR+Rls++ a++fF Lqd LGfdk+skt+eWLl+++kpai eltg                        
  Sme2.5_00968.1_g00004.1 132 SNKDRHSKINTARGPRDRRMRLSLDAARKFFHLQDLLGFDKASKTVEWLLNKSKPAIEELTGKgnegprhpdankqisgstttgig 217
                              579***********************************************************************999999999998 PP

                      TCP  66 ....ssssasec.....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                  s+s +++c     ++e+sss ++++++++++++++k+  s+++ a+   + kesr++arararert+ k++ +
  Sme2.5_00968.1_g00004.1 218 aicaSNSISESCevisgTDETSSSDKNKETAKEEKRKKKKKTASTARRAELEPPTKESRNQARARARERTKTKKMSQ 294
                              88874444456777763333333333333333555555588888888888999999************999987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-45132293IPR005333Transcription factor, TCP
PROSITE profilePS5136934.961133191IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.583273290IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MYPPSNNNCD YSAILSSLIS QNIPASPCMQ YEHELYFQSY HNDDLYNYFQ QQPLPFIEDL  60
SVHNLLADSC TETVAKPLNC TDNVIITSNH VLEGVDEGGG GEGRGGNKGE DVMSCRNSFI  120
RGRISKNNKR SSNKDRHSKI NTARGPRDRR MRLSLDAARK FFHLQDLLGF DKASKTVEWL  180
LNKSKPAIEE LTGKGNEGPR HPDANKQISG STTTGIGAIC ASNSISESCE VISGTDETSS  240
SDKNKETAKE EKRKKKKKTA STARRAELEP PTKESRNQAR ARARERTKTK KMSQIGKSKA  300
LAHDLNPSRS RRPINEVCEE PGTHEQLSFH QENNVDESNL VVNGNWNPFS IFSYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251257KRKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275622.11e-168TCP transcription factor BRC1b
TrEMBLF6KB961e-168F6KB96_SOLTU; BRANCHED1B
STRINGSolyc06g069240.1.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-24TCP domain protein 12